PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012478P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 385aa    MW: 42284.7 Da    PI: 10.5461
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012478P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.69.9e-1179162186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v +L++a+++++   +r+klk+++We+v++++ ++  f   +++ +qCk+k+e+++k  kk++++  +      s++p+ ++++
  MELO3C012478P1  79 EWSDGAVSTLLDAYESKWILRNRAKLKGHDWEDVARHVsSRSNFtksSKTHTQCKNKIESMKK--KKCRAIPASA----ASSWPWNHRVQ 162
                     5*************************************755555111556679*********9..7999999984....44688887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1377160No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEIKPTPSSP PTTEIKPEIK STPSSPPTAS LTLTQTQTSP SLLFNHHHHH QLPDDNPSPK  60
ENHVSTGGGG GGKRLKRDEW SDGAVSTLLD AYESKWILRN RAKLKGHDWE DVARHVSSRS  120
NFTKSSKTHT QCKNKIESMK KKKCRAIPAS AASSWPWNHR VQHFLGGNSN LTPPPSPPPP  180
LVDLVDPPPP PPSPPPFLSP QNSHGSNGVD NINPSPKEDG VDNGRGGDEL LSEKNKNKNK  240
NNSNNKKKMV PEKTDSSSST PAAIAYSTSD EKLGKGVAAM RSKLQQSKMK KKKRRRRSGE  300
VDSLEEIAGS IRWLAEVVVR SEQARMEMIK DIEKMRAEAE AKRGELDLKR TQIIANTQLE  360
IAKLFASPTT KPLVDHSSLR IART*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294KKKKRR
2290295KKKRRR
3290296KKKRRRR
4291296KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446967.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103489520
TrEMBLA0A0A0KRQ81e-162A0A0A0KRQ8_CUCSA; Uncharacterized protein
STRINGGLYMA13G26550.19e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-73sequence-specific DNA binding transcription factors